Senior AI Research Scientist
Infobip
A man’s maturity consists in having found again the seriousness one had as a child at play.
Experience
Entropic · Full-time
OmicsAgent — AI Agents for bioinformatics.
- Built OmicsAgent, an AI agent system for running bioinformatics workflows on cloud compute.
- Owned the platform end to end: agent orchestration, tool execution, long-running jobs, telemetry, and Azure infrastructure.
- Worked with research labs and biotech customers on integrations and compute planning; built evaluation datasets, an open-source benchmark, and MCP tooling.
- Wrote and managed EU projects from proposal through delivery.
- Stack Python, Svelte, Go, Azure, Docker, and Postgres.
Digacon · Full-time
StrömungsRaum — web-based simulation and optimization platform.
- Led a remote team of four across hiring, onboarding, mentoring, delivery, and code review.
- Shipped simulation models and production features for large German industrial clients, working across Python/C++ services, the Vue interface, and containerized deployments.
- Stack Python, C++, Vue.js, Docker, Kubernetes, and Hetzner.
Sanitas Analytica
AI Clinical Decision Support Software
- Founding engineer for Polypharm Solutions, a FHIR-based personalized prescribing platform that reached approximately 1,000 users across universities, practices, and hospitals.
- Owned the product across clinical data and rules, drug-risk and dosing modules, the Angular clinician interface, and AWS/Postgres operations.
- Applied propensity-score matching, basket analysis, and cohort analysis to real-world side-effect patterns.
- Wrote and managed EU projects from proposal through delivery.
- Stack Python, Angular, Postgres, AWS, FHIR, statistical modeling, Docker, and CI/CD.
Ruđer Bošković Institute
Research in applied machine learning.
- Delivered applied ML research across genomics, chemistry, and protein-interaction networks.
- Built graph and attention models, classical ML pipelines, and statistical analyses with lab collaborators.
- Wrote and managed EU projects from proposal through delivery, including early research prototypes.
- Deployed services on GPU and Kubernetes infrastructure and presented results to scientific audiences.
- Stack Python, PyTorch, PyTorch Geometric, scikit-learn, R, Jupyter, Docker, Kubernetes, gRPC, Git, and Linux.
Publications & Talks
2026
2025
-
KulenDayz Tech Talk: Building AI Agents,
Lessons and Realities
Dionizije Fa. Web -
Evaluating LLMs for Agentic Workflows in
Bioinformatics (GLBIO)
Dionizije Fa, Bruno Pandža, Mateo Čupić. GLBIO 2025 Poster -
Building Agentic Workflows for Bioinformatics
(Tutorial)
Dionizije Fa, Bruno Pandža, Mateo Čupić. ISCB-Africa 2025 · Materials
2022
-
Discrimination Between Approved and Withdrawn
Drugs
B. Lučić, V. Stepanić, D. Fa, O. Jović, T. Lipić, T. Šmuc. Publication · Code